PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10018942m
Common NameEUTSA_v10018942mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family C3H
Protein Properties Length: 297aa    MW: 33121.4 Da    PI: 8.6882
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10018942mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH47.33.2e-15212236226
                      -S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                      ktelC+ +++tGtC+yGd C+FaHg
  Thhalv10018942m 212 KTELCNKWQETGTCPYGDHCQFAHG 236
                      9***********************8 PP
2zf-CCCH20.67.6e-07249274126
                      --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                      ykte Cr  +++  C+yG rC+F H+
  Thhalv10018942m 249 YKTEVCRMVLAGDACPYGHRCHFRHS 274
                      9**********55**********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.9E-18205243IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.79E-11207242IPR000571Zinc finger, CCCH-type
SMARTSM003563.9E-9210237IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.23210238IPR000571Zinc finger, CCCH-type
PfamPF006422.9E-12212236IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.0E-13244277IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.92E-9244279IPR000571Zinc finger, CCCH-type
SMARTSM003562.3E-5248275IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.272248276IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MKPQGEPSGV GVAPPSLLCD QLYKSSRNVM QQRQDMVNRE ALCYTRLHEA SLEAEVLRLE  60
NAQLRSMNRH LKTELDQLIR SSIQNRLNHD RVPLRMLSNL SIGGNHDANG AENQNRAPIR  120
DEVSEESPTS VIENEDVNRS SLPKSISVRS SGYSKSSQGG GAAQCGKSRG TLPKPGTCGQ  180
QLTTTQKVYV RGGKKEEEEE IEVEVYNQGM TKTELCNKWQ ETGTCPYGDH CQFAHGIKEL  240
RPVIRHPRYK TEVCRMVLAG DACPYGHRCH FRHSLSEQEK LMAAGFKPKS SFKVLK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A3e-22212277570Butyrate response factor 2
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00383ampDAPTransfer from AT1G68200Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006391172.10.0hypothetical protein EUTSA_v10018942mg
SwissprotQ9C9F51e-154C3H15_ARATH; Zinc finger CCCH domain-containing protein 15
TrEMBLV4KMB60.0V4KMB6_EUTSA; Uncharacterized protein
STRINGBra004288.1-P1e-166(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM72872339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.11e-144C3H family protein